Base

Implementation of structure class.

Prepared

Base class for prepared structures.

get_info(context)

This function gives information about the prepared structure.

PARAMETER	DESCRIPTION
context	Context object with information about the preparation.

RETURNS	DESCRIPTION
dict[str, str | int | float | bool]	Dictionary with information about the preparation depending on the type of structure.

Structure(file_path=None, file_id=None)

Bases: ABC

Base class for any physical structure.

file_ext = self.file_ext.lstrip('.')

file_id = file_id

file_name = os.path.basename(file_path)

file_path = file_path

load(file_path=None, write=False, write_path=None, pdb_id=None)

Load structural data from a variety of sources.

PARAMETER	DESCRIPTION
file_path	Path to file to load.
write	Keep structure in file and load when requested. If False, this will keep the structure in memory.
write_path	Path to write to file.
pdb_id	Four-letter code to load structure from RCSB.