Viz
viz.Visualize(context, corr_matrix_object, pths)
¶
A class to facilitate the visualization of the identified paths in VMD
Get paths between a single sink and a single source
| PARAMETER | DESCRIPTION |
|---|---|
context
|
the user-specified command-line parameters, a UserInput object
|
residue_keys
|
a list containing string representations of each residue ("CHAIN_RESNAME_RESID")
|
node_locs
|
a dictionary, mapping string representations of each residue to a np.array representation of the node location
|
pths
|
a GetPaths object
|
viz.log(astring, fileobjects, print_viz=False)
¶
Outputs WISP messages
| PARAMETER | DESCRIPTION |
|---|---|
astring
|
a string containing the message
|
fileobjects
|
a list of python file objects specifying where the messages hould be saved.
|
print_viz
|
Print viz commands as well.
DEFAULT:
|