Utils
utils.GetCovarianceMatrix(context)
¶
Calculate and store the covariance matrix
| PARAMETER | DESCRIPTION |
|---|---|
context
|
WISP context for computing the covariance matrix.
|
average_pdb = None
instance-attribute
¶
correlations = np.empty((len(self.average_pdb.residue_identifiers_in_order), len(self.average_pdb.residue_identifiers_in_order)))
instance-attribute
¶
__getitem__(_)
¶
convert_list_of_residue_keys_to_residue_indices(list_residue_keys)
¶
Identify the indices in a nx.Graph object corresponding to the identified residue string ids (CHAIN_RESNAME_RESID).
| PARAMETER | DESCRIPTION |
|---|---|
list_residue_keys
|
a list of strings representing protein residues (format: CHAIN_RESNAME_RESID)
TYPE:
|
| RETURNS | DESCRIPTION |
|---|---|
|
a list of ints, the nx.Graph indices corresponding to the residue |
|
|
string ids in list_residue_keys |